When tagopt is set to '--tags', we should only take the default tags
refspec into account and ignore any configured ones.
Bring the code into compliance.
When a patch contained an eofnl change (i.e. the last line either
gained or lost a newline), the oldno and newno line number values
for the lines in the last hunk of the patch were not useful. This
makes them behave in a more expected manner.
This adds a new line origin constant for the special line that
is used when both files end without a newline.
In the course of writing the tests for this, I was having problems
with modifying a file but not having diff notice because it was
the same size and modified less than one second from the start of
the test, so I decided to start working on nanosecond timestamp
support. This commit doesn't contain the nanosecond support, but
it contains the reorganization of maybe_modified and the hooks so
that if the nanosecond data were being read by stat() (or rather
being copied by git_index_entry__init_from_stat), then the nsec
would be taken into account.
This new stuff could probably use some more tests, although there
is some amount of it here.
Currently git_branch_set_upstream when passed a local branch
creates invalid configuration, for ex. if we setup branch
'tracking_master' to track local 'master' libgit2 generates
the following config
```
[branch "track_master"]
remote = .
merge = .refs/heads/track_master
```
The merge value is invalid and calling git_branch_upstream on
'tracking_master' results in invalid reference error.
It should do:
```
[branch "track_master"]
remote = .
merge = refs/heads/master
```
We use p->index_map.data to check whether the struct has been set up
and all the information about the index is stored there. This variable
gets set up halfway through the setup process, however, and a thread
can come along and use fields that haven't been written to yet.
Crucially, pack_entry_find_offset() needs to read the index version
(which is written after index_map) to know the offset and stride
length to pass to sha1_entry_pos(). If these values are wrong,
assertions in it will fail, as it will be reading bogus data.
Make index_version the last field to be written and switch from using
p->index_map.data to p->index_version as "git_pack_file is ready" flag
as we can use it to know if every field has been written.
