Submodules don't exist in the objectdb and the code is making us try to
look for a blob with its commit id, which is obviously not going to
work.
Skip the test if the user wants to insert a submodule.
Path validation may be influenced by `core.protectHFS` and
`core.protectNTFS` configuration settings, thus treebuilders
can take a repository to influence their configuration.
Finding a filename in a vector means we need to resort it every time we
want to read from it, which includes every time we want to write to it
as well, as we want to find duplicate keys.
A hash-map fits what we want to do much more accurately, as we do not
care about sorting, but just the particular filename.
We still keep removed entries around, as the interface let you assume
they were going to be around until the treebuilder is cleared or freed,
but in this case that involves an append to a vector in the filter case,
which can now fail.
The only time we care about sorting is when we write out the tree, so
let's make that the only time we do any sorting.
This wasn't being tested and since it has a callback, I fixed it
even though the return value of this callback is not treated like
any of the other callbacks in the API.
